emacs: add prot-emacs-configure to a few more places

Just to be sure I catch any errors with thoses.

emacs/.emacs.d/prot-emacs-modules/prot-emacs-langs.el

@@ -79,7 +79,8 @@
   (setq eglot-autoshutdown t))
 
 ;;;; Handle performance for very long lines (so-long.el)
-(global-so-long-mode 1)
+(prot-emacs-configure
+  (global-so-long-mode 1))
 
 ;;; Markdown (markdown-mode)
 (prot-emacs-configure
@@ -87,7 +88,8 @@
   (setq markdown-fontify-code-blocks-natively t))
 
 ;;; csv-mode
-(prot-emacs-install csv-mode)
+(prot-emacs-configure
+  (prot-emacs-install csv-mode))
 
 ;;; SXHKDRC mode (one of my many packages)
 (prot-emacs-configure
@@ -284,7 +286,8 @@ retroactively follow that order."
       (consult-denote-mode 1))))
 
 ;;;; Denote Org extras (denote-org)
-(prot-emacs-install denote-org)
+(prot-emacs-configure
+  (prot-emacs-install denote-org))
 
 ;;;; Denote Sequence notes or folgezettel (denote-sequence)
 (prot-emacs-configure
@@ -299,7 +302,8 @@ retroactively follow that order."
   (setq denote-sequence-scheme 'alphanumeric))
 
 ;;;; Denote Markdown extras (denote-markdown)
-(prot-emacs-install denote-markdown)
+(prot-emacs-configure
+  (prot-emacs-install denote-markdown))
 
 ;;;; Denote Journal extras (denote-journal)
 (prot-emacs-configure

emacs/.emacs.d/prot-emacs-modules/prot-emacs-org.el

@@ -125,10 +125,11 @@
       pulsar)))
 
 ;;;; `org-indent-mode' and related
-(with-eval-after-load 'org
-  (setq org-adapt-indentation nil) ; No, non, nein, όχι to literal indentation!
-  (setq org-indent-mode-turns-on-hiding-stars nil)
-  (setq org-indent-indentation-per-level 4))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-adapt-indentation nil) ; No, non, nein, όχι to literal indentation!
+    (setq org-indent-mode-turns-on-hiding-stars nil)
+    (setq org-indent-indentation-per-level 4)))
 
 ;;;; refile, todo
 (with-eval-after-load 'org
@@ -187,35 +188,39 @@
   (setq org-enforce-todo-checkbox-dependencies t))
 
 ;;;; tags
-(with-eval-after-load 'org
-  (setq org-tag-alist nil)
-  (setq org-auto-align-tags nil)
-  (setq org-tags-column 0))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-tag-alist nil)
+    (setq org-auto-align-tags nil)
+    (setq org-tags-column 0)))
 
 ;;;; log
-(with-eval-after-load 'org
-  (setq org-log-done 'time)
-  (setq org-log-into-drawer t)
-  (setq org-log-note-clock-out nil)
-  (setq org-log-redeadline 'time)
-  (setq org-log-reschedule 'time))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-log-done 'time)
+    (setq org-log-into-drawer t)
+    (setq org-log-note-clock-out nil)
+    (setq org-log-redeadline 'time)
+    (setq org-log-reschedule 'time)))
 
 ;;;; links
-(with-eval-after-load 'org
-  (setq org-return-follows-link t)
-  (setq org-link-context-for-files t)
-  (setq org-link-keep-stored-after-insertion nil)
-  (setq org-id-link-to-org-use-id 'create-if-interactive-and-no-custom-id))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-return-follows-link t)
+    (setq org-link-context-for-files t)
+    (setq org-link-keep-stored-after-insertion nil)
+    (setq org-id-link-to-org-use-id 'create-if-interactive-and-no-custom-id)))
 
 ;;;; code blocks
-(with-eval-after-load 'org
-  (setq org-confirm-babel-evaluate nil)
-  (setq org-src-window-setup 'current-window)
-  (setq org-edit-src-persistent-message nil)
-  (setq org-src-fontify-natively t)
-  (setq org-src-preserve-indentation t)
-  (setq org-src-tab-acts-natively t)
-  (setq org-edit-src-content-indentation 0))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-confirm-babel-evaluate nil)
+    (setq org-src-window-setup 'current-window)
+    (setq org-edit-src-persistent-message nil)
+    (setq org-src-fontify-natively t)
+    (setq org-src-preserve-indentation t)
+    (setq org-src-tab-acts-natively t)
+    (setq org-edit-src-content-indentation 0)))
 
 ;;;; export
 (prot-emacs-configure

emacs/.emacs.d/prot-emacs-modules/prot-emacs-window.el

@@ -146,9 +146,11 @@
   (setq window-min-height 3)
   (setq window-min-width 30))
 
-(prot-emacs-hook (epa-info-mode-hook help-mode-hook custom-mode-hook) visual-line-mode)
+(prot-emacs-configure
+  (prot-emacs-hook (epa-info-mode-hook help-mode-hook custom-mode-hook) visual-line-mode))
 
-(prot-emacs-hook (world-clock-mode-hook calendar-mode-hook) prot-common-truncate-lines-silently)
+(prot-emacs-configure
+  (prot-emacs-hook (world-clock-mode-hook calendar-mode-hook) prot-common-truncate-lines-silently))
 
 (prot-emacs-configure
   (prot-emacs-keybind global-map

emacs/.emacs.d/prot-emacs.org

@@ -6423,7 +6423,8 @@ For the cases where I am fine with ~visual-line-mode~, I enable the
 mode by adding it to these mode hooks.
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-window.el"
-(prot-emacs-hook (epa-info-mode-hook help-mode-hook custom-mode-hook) visual-line-mode)
+(prot-emacs-configure
+  (prot-emacs-hook (epa-info-mode-hook help-mode-hook custom-mode-hook) visual-line-mode))
 #+end_src
 
 *** The =prot-emacs-window.el= settings to truncate some buffers silently
@@ -6447,7 +6448,8 @@ The whole point of using hooks is to make these decisions on a
 case-by-case basis.
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-window.el"
-(prot-emacs-hook (world-clock-mode-hook calendar-mode-hook) prot-common-truncate-lines-silently)
+(prot-emacs-configure
+  (prot-emacs-hook (world-clock-mode-hook calendar-mode-hook) prot-common-truncate-lines-silently))
 #+end_src
 
 *** The =prot-emacs-window.el= section key bindings
@@ -7570,10 +7572,11 @@ instead of =2=.
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-org.el"
 ;;;; `org-indent-mode' and related
-(with-eval-after-load 'org
-  (setq org-adapt-indentation nil) ; No, non, nein, όχι to literal indentation!
-  (setq org-indent-mode-turns-on-hiding-stars nil)
-  (setq org-indent-indentation-per-level 4))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-adapt-indentation nil) ; No, non, nein, όχι to literal indentation!
+    (setq org-indent-mode-turns-on-hiding-stars nil)
+    (setq org-indent-indentation-per-level 4)))
 #+end_src
 
 *** The =prot-emacs-org.el= Org to-do and refile settings
@@ -7728,10 +7731,11 @@ it.
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-org.el"
 ;;;; tags
-(with-eval-after-load 'org
-  (setq org-tag-alist nil)
-  (setq org-auto-align-tags nil)
-  (setq org-tags-column 0))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-tag-alist nil)
+    (setq org-auto-align-tags nil)
+    (setq org-tags-column 0)))
 #+end_src
 
 *** The =prot-emacs-org.el= Org time/state logging
@@ -7749,12 +7753,13 @@ mistakes or figure out intent in the absence of further clarification
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-org.el"
 ;;;; log
-(with-eval-after-load 'org
-  (setq org-log-done 'time)
-  (setq org-log-into-drawer t)
-  (setq org-log-note-clock-out nil)
-  (setq org-log-redeadline 'time)
-  (setq org-log-reschedule 'time))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-log-done 'time)
+    (setq org-log-into-drawer t)
+    (setq org-log-note-clock-out nil)
+    (setq org-log-redeadline 'time)
+    (setq org-log-reschedule 'time)))
 #+end_src
 
 *** The =prot-emacs-org.el= Org link settings
@@ -7803,11 +7808,12 @@ I bind ~org-store-link~ in main section of the Org configuration:
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-org.el"
 ;;;; links
-(with-eval-after-load 'org
-  (setq org-return-follows-link t)
-  (setq org-link-context-for-files t)
-  (setq org-link-keep-stored-after-insertion nil)
-  (setq org-id-link-to-org-use-id 'create-if-interactive-and-no-custom-id))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-return-follows-link t)
+    (setq org-link-context-for-files t)
+    (setq org-link-keep-stored-after-insertion nil)
+    (setq org-id-link-to-org-use-id 'create-if-interactive-and-no-custom-id)))
 #+end_src
 
 *** The =prot-emacs-org.el= Org code block settings
@@ -7877,14 +7883,15 @@ This is a wonderful world of possibilities!
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-org.el"
 ;;;; code blocks
-(with-eval-after-load 'org
-  (setq org-confirm-babel-evaluate nil)
-  (setq org-src-window-setup 'current-window)
-  (setq org-edit-src-persistent-message nil)
-  (setq org-src-fontify-natively t)
-  (setq org-src-preserve-indentation t)
-  (setq org-src-tab-acts-natively t)
-  (setq org-edit-src-content-indentation 0))
+(prot-emacs-configure
+  (with-eval-after-load 'org
+    (setq org-confirm-babel-evaluate nil)
+    (setq org-src-window-setup 'current-window)
+    (setq org-edit-src-persistent-message nil)
+    (setq org-src-fontify-natively t)
+    (setq org-src-preserve-indentation t)
+    (setq org-src-tab-acts-natively t)
+    (setq org-edit-src-content-indentation 0)))
 #+end_src
 
 *** The =prot-emacs-org.el= Org export settings
@@ -8691,7 +8698,8 @@ in case.
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-langs.el"
 ;;;; Handle performance for very long lines (so-long.el)
-(global-so-long-mode 1)
+(prot-emacs-configure
+  (global-so-long-mode 1))
 #+end_src
 
 *** The =prot-emacs-langs.el= settings for ~markdown-mode~
@@ -8726,7 +8734,8 @@ or space) and shows a tab stop in its stead.
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-langs.el"
 ;;; csv-mode
-(prot-emacs-install csv-mode)
+(prot-emacs-configure
+  (prot-emacs-install csv-mode))
 #+end_src
 
 *** The =prot-emacs-langs.el= settings for ~sxhkdrc-mode~
@@ -9152,7 +9161,8 @@ Watch:
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-langs.el"
 ;;;; Denote Org extras (denote-org)
-(prot-emacs-install denote-org)
+(prot-emacs-configure
+  (prot-emacs-install denote-org))
 #+end_src
 
 **** The =prot-emacs-langs.el= extension for Denote sequence notes or folgezettel (~denote-sequence~)
@@ -9206,7 +9216,8 @@ standardised way to define custom link types).
 
 #+begin_src emacs-lisp :tangle "prot-emacs-modules/prot-emacs-langs.el"
 ;;;; Denote Markdown extras (denote-markdown)
-(prot-emacs-install denote-markdown)
+(prot-emacs-configure
+  (prot-emacs-install denote-markdown))
 #+end_src
 
 **** The =prot-emacs-langs.el= extension for Denote Journal extras (~denote-journal~)